PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_013657-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family MYB
Protein Properties Length: 240aa    MW: 27268.5 Da    PI: 9.2301
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_013657-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.46e-171562148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+WT+eEdell  ++k+ G g+W+t +++ g+ R++k+c++rw +yl
    NNU_013657-RA 15 RGPWTQEEDELLSSYIKREGEGRWRTLPKRAGLLRCGKSCRLRWMNYL 62
                     89******************************99************97 PP

2Myb_DNA-binding47.63.8e-1573113648
                      HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   6 teEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      ++E++l+++++++lG++ W++Ia +++ gRt++++k++w+++l
    NNU_013657-RA  73 PDEEDLILRLHRLLGNR-WSLIAGRIP-GRTDNEIKNYWNTHL 113
                      89***************.*********.************996 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.6141062IPR017930Myb domain
SuperFamilySSF466892.49E-2812109IPR009057Homeodomain-like
SMARTSM007171.5E-121464IPR001005SANT/Myb domain
PfamPF002498.9E-151562IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.0E-211669IPR009057Homeodomain-like
CDDcd001676.59E-101762No hitNo description
PROSITE profilePS5129424.65363117IPR017930Myb domain
SMARTSM007172.7E-1367115IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.8E-2470118IPR009057Homeodomain-like
CDDcd001676.17E-1173113No hitNo description
PfamPF002496.4E-1473113IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 240 aa     Download sequence    Send to blast
MRNRNSSSSA AGLKRGPWTQ EEDELLSSYI KREGEGRWRT LPKRAGLLRC GKSCRLRWMN  60
YLRPSIKRGQ IAPDEEDLIL RLHRLLGNRW SLIAGRIPGR TDNEIKNYWN THLSKKLISQ  120
GIDPRTHKPL NPNPNSSEEN INPPPPPPAS RPHPNPEPRV CGGATTTYKG KMHFTEMNLD  180
QDQSRKVGKG EENRTNSDGF MIGSRHGNNN EEDDIDCSTD EVFSSFLNSL INEDMLGNQQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-25131175108B-MYB
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010266681.11e-178PREDICTED: transcription repressor MYB5-like
SwissprotQ388502e-80MYB5_ARATH; Transcription repressor MYB5
TrEMBLF6HLE71e-102F6HLE7_VITVI; Putative uncharacterized protein
TrEMBLH9TZS91e-103H9TZS9_9R
TrEMBLQ6Q7891e-102Q6Q789_VITVI; Myb transcription factor
STRINGVIT_08s0007g07230.t011e-102(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13540.13e-76myb domain protein 5